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"The marks are somewhere between 120 and 180 off from where I would think they should be.."
Not sure why your pulley is indexed incorrrectly. However, each cylinder fires 120º apart. Try connecting the timing light pickup on the plug wire either before or after #1 wire on the cap.
The firing order is 162435, so the adjacent cylinders are either #5 or #6. If the marks now line up, time the engine using that cylinder. It doesn't matter as long as the TDC mark on the pulley truly indicates TDC (for #5 or 6).
Sherwood
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