It does sit high.
My main concern is the hot side protruding into the engine compartment like that, lots of unwanted heat.
Do you have any pictures where we can see the header and turbo from the back and below?
I like the Fuchs on the wall in the last picture
Btw , the craftsmanship looks really good.
I wonder if the weight of the engine sitting on those headers ( i dont know how sturdy those are) raises the turbo some. I would try putting it back in the car before modding too much.